Get a table of feature intensities from the patRoon output. — get_feat_table_from

Given the featureGroups table obtained from patRoon, it creates a table with only the name of features in the first column and the intensities of features in each other column.

Usage

get_feat_table_from_patRoon(
  patRoon_featureGroups = NULL,
  patRoon_featureGroups_file_name = NULL
)

Arguments

patRoon_featureGroups: NULL or a dataframe. Features groups and related intensities obtained after XCMS. This table should contain the feature group names in a column named "group", the retention times a column named "ret", the m/z ratio in a column named "mz", and the intensities in all other columns.
patRoon_featureGroups_file_name: NULL or a character vector of length 1. If patRoon_featureGroups is NULL, this can be used and directly import the table with the .csv or .txt file name passed.

Value

A tibble with the feature intensities.