Get a table of feature intensities from the MSDIAL export file.
get_feat_table_from_MSDial.RdGiven a table exported from MSDIAL (exporting the Area from MS-Dial 5.1.230912), it creates a table with only the name of features in the first column (same names created in the one of the featINFO) and the intensities of features in each other column.
Usage
get_feat_table_from_MSDial(
MSDIAL_raw_table = NULL,
MSDIAL_raw_table_file_name = NULL,
n_last_coloums_to_delete = 2
)Arguments
- MSDIAL_raw_table
NULL or a dataframe. Load on R the exported table using write_tsv or write_csv, then directly pass it in this argument. This argument will be ignored if the following one is not NULL.
- MSDIAL_raw_table_file_name
NULL or a character vector of length 1. The name of the .txt file of the MSDIAL exported table to import. It is preferred to use this argument instead of the previous, so the table will be also imported with the correct column types and information.
- n_last_coloums_to_delete
numeric of length 1. Usually in the exported file from MSDIAL, the last columns are for descriptive statistics of the features. Pass here the number of the last columns that you need to remove.