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Get a featINFO table from the MSDIAL export file.

get_feat_info_from_MSDial.Rd

Given a table exported from MSDIAL (exporting the Area from MS-Dial 5.1.230912), it creates the featINFO table, i.e. the table with the full information on each feature.

Usage

get_feat_info_from_MSDial(
  MSDIAL_raw_table = NULL,
  MSDIAL_raw_table_file_name = NULL,
  add_AnnoLevels = FALSE
)

Arguments

MSDIAL_raw_table

NULL or a dataframe. Load on R the exported table using write_tsv or write_csv, then directly pass it in this argument. This argument will be ignored if the following one is not NULL.

MSDIAL_raw_table_file_name

NULL or a character vector of length 1. The name of the .txt file of the MSDIAL exported table to import. It is preferred to use this argument instead of the previous, so the table will be also imported with the correct column types and information.

add_AnnoLevels

logical. If TRUE, an additional column named "AnnoLevels" will be added, and the annotation levels will be calculated considering the cut-offs reported in https://doi.org/10.1007/s00216-022-04207-z.

Value

A tibble with the information for each feature.