Do FELLA enrichment_analysis.
do_FELLA_enrichment_analysis.Rd
Given KEGG codes and a defined organism, it performs the enrichment_analysis with the FELLA package.
Usage
do_FELLA_enrichment_analysis(
organism_code,
KEGG_codes,
path_databases = "C:/databases/FELLA/",
output_prefix = "",
output_suffix = ""
)
Arguments
- organism_code
character of length 1. The KEGG organism code. For example, for homo sapiens (human) is 'hsa'. All codes are here: https://www.genome.jp/kegg/tables/br08606.html.
- KEGG_codes
Character. KEGG codes of compounds.
- path_databases
Character of length 1. Path of local organism databases.
- output_prefix
Character of length 1. What to add at the beginning of generated file names and object names.
- output_suffix
Character of length 1. What to add at the end of generated file names and object names.